One of us is wrong or confused, and since you are the genetisist it is probably me, in which case I should not have guessed how it works from statistical intuition but read more, I did not because I wanted to write my post before people forgot yours.
I assumed the spike and slap were across all SNPs, it sounds like it is per LD region, which is why you have multiple spikes?, I also assumed the slab part would shrink the original effect size, which was what I was mainly interested in.
You are welcome to pm me to get my discord name or phone number if a quick call could give me the information to not misrepresent what you are doing
My main critique is that I think there is insufficient shrinkage, so it’s the shrinkage properties I am mostly interested in getting right :)
One of us is wrong or confused, and since you are the genetisist it is probably me, in which case I should not have guessed how it works from statistical intuition but read more, I did not because I wanted to write my post before people forgot yours.
I assumed the spike and slap were across all SNPs, it sounds like it is per LD region, which is why you have multiple spikes?, I also assumed the slab part would shrink the original effect size, which was what I was mainly interested in. You are welcome to pm me to get my discord name or phone number if a quick call could give me the information to not misrepresent what you are doing
My main critique is that I think there is insufficient shrinkage, so it’s the shrinkage properties I am mostly interested in getting right :)