I agree that this probably happens when you set out to mess with an arbitrary particular S, I.e. try to make some S’ that shares a prefix with S as likely as S.
However, some S are special, in the sense that their prefixes are being used to make very important decisions. If you, as a malicious TM in the prior, perform an exhaustive search of universes, you can narrow down your options to only a few prefixes used to make pivotal decisions, selecting one of those to mess with is then very cheap to specify. I use S to refer to those strings that are the ‘natural’ continuation of those cheap-to-specify prefixes.
There are, it seems to me, a bunch of other equally-complex TMs that want to make other strings that share that prefix more likely, including some that promote S itself. What the resulting balance looks like is unclear to me, but what’s clear is that the prior is malign with respect to that prefix—conditioning on that prefix gives you a distribution almost entirely controlled by these malign TMs. The ‘natural’ complexity of S, or of other strings that share the prefix, play almost no role in their priors.
The above is of course conditional on this exhaustive search being possible, which also relies on there being anyone in any universe that actually uses the prior to make decisions. Otherwise, we can’t select the prefixes that can be messed with.
The trigger sequence is a cool idea.
I want to add that the intended generator TM also needs to specify a start-to-read time, so there is symmetry there. Whatever method a TM needs to use to select the camera start time in the intended generator for the real world samples, it can also use in the simulated world with alien life, since for the scheme to work only the difference in complexity between the two matters.
There is additional flex in that unlike the intended generator, the reasoner TM can sample its universe simulation at any cheaply computable interval, giving the civilisation the option of choosing any amount of thinking they can perform between outputs, if they so choose.